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1

Insulin-Mediated Downregulation of Apolipoprotein A-I Gene in Human Hepatoma Cell Line HepG2: The Role of Interaction between FOXO1 and LXRβ Transcription Factors

Shavva, Vladimir S., Bogomolova, Alexandra M., Nikitin, Artemy A., Dizhe, Ella B., Tanyanskiy, Dmitry A., Efremov, Alexander M., Oleinikova, Galina N., Perevozchikov, Andrej P., Orlov, Sergey V.

Journal:

Journal of Cellular Biochemistry

Year:

2016

Language:

english

File:

PDF, 1.74 MB

english, 2016

2

Details of the disorder-induced transition between s± and s++ states in two-band model for Fe-based superconductors

Shestakov, Vadim A, Korshunov, Maxim M, Togushova, Yuliya N, Efremov, Dmitri, Dolgov, Oleg V

Journal:

Superconductor Science and Technology

Year:

2018

Language:

english

File:

PDF, 502 KB

english, 2018

3

Quality Assessment of Studies Published in Open Access and Subscription Journals: Results of a Systematic Evaluation

Pastorino, Roberta, Milovanovic, Sonja, Stojanovic, Jovana, Efremov, Ljupcho, Amore, Rosarita, Boccia, Stefania, Zaykin, Dmitri

Journal:

Year:

2016

Language:

english

File:

PDF, 358 KB

english, 2016

4

[IEEE 2019 IEEE Conference of Russian Young Researchers in Electrical and Electronic Engineering (EIConRus) - Saint Petersburg and Moscow, Russia (2019.1.28-2019.1.31)] 2019 IEEE Conference of Russian Young Researchers in Electrical and Electronic Engineering (EIConRus) - Multiple Bands Dual Polarization Antenna System for Ground Surface State Estimation

Kuzmin, Ilya A., Prihodko, Dmitry V., Efremov, Ilya V., Oreshkin, Vitaly I., Maksimovskaya, Anna I.

Year:

2019

Language:

english

File:

PDF, 813 KB

english, 2019

5

Pyrenemethyl ara-Uridine-2′-carbamate: A Strong Interstrand Excimer in the Major Groove of a DNA Duplex

Natalia N. Dioubankova, Andrei D. Malakhov, Dmitry A. Stetsenko, Michael J. Gait, Pavel E. Volynsky, Roman G. Efremov, Vladimir A. Korshun

Journal:

Year:

2003

Language:

english

File:

PDF, 163 KB

english, 2003

6

Bond centered vs. site-centered charge ordering: ferroelectricity in oxides

Dmitri V. Efremov, Jeroen van den Brink, Daniel I. Khomskii

Journal:

Physica B: Condensed Matter

Year:

2005

Language:

english

File:

PDF, 169 KB

english, 2005

7

Superfluidity and superconductivity in fermionic systems with repulsion

Dmitry V Efremov, Maxim S Mar'enko, Mikhail A Baranov, Maxim Yu Kagan

Journal:

Physica B: Condensed Matter

Year:

2000

Language:

english

File:

PDF, 83 KB

english, 2000

8

Effects of high oxygen concentrations on microbial biosensor signals. Hyperoxygenation by means of perfluorodecalin

Anatoly N. Reshetilov, Dmitry A. Efremov, Pavel V. Iliasov, Alexander M. Boronin, Nikolay I. Kukushskin, Richard V. Greene, Timothy D. Leathers

Journal:

Biosensors and Bioelectronics

Year:

1998

Language:

english

File:

PDF, 268 KB

english, 1998

9

Specificity of helix packing in transmembrane dimer of the cell death factor BNIP3: A molecular modeling study

Yana A. Vereshaga, Pavel E. Volynsky, Julia E. Pustovalova, Dmitry E. Nolde, Alexander S. Arseniev, Roman G. Efremov

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 2.16 MB

english, 2007

10

Host cell properties and external pH affect proinsulin production by Saccharomyces yeast

Dmitry G. Kozlov, Natalija Prahl, Boris D. Efremov, Lars Peters, Sergei V. Benevolensky, Rolf Wambut, Igor V. Karpychev, Mikhail A. Eldarov

Journal:

Year:

1995

Language:

english

File:

PDF, 958 KB

english, 1995

11

Application of three-dimensional molecular hydrophobicity potential to the analysis of spatial organization of membrane domains in proteins: I. Hydrophobic properties of transmembrane segments of Na+, K+-ATPase

Roman G. Efremov, Dmitry I. Gulyaev, Gerard Vergoten, Nikolai N. Modyanov

Journal:

The Protein Journal

Year:

1992

Language:

english

File:

PDF, 1.08 MB

english, 1992

12

Application of three-dimensional molecular hydrophobicity potential to the analysis of spatial organization of membrane protein domains. II. Optimization of hydrophobic contacts in transmembrane hairpin structures of Na+, K+-ATPase

Roman G. Efremov, Dmitry I. Gulyaev, Nikolai N. Modyanov

Journal:

The Protein Journal

Year:

1992

Language:

english

File:

PDF, 903 KB

english, 1992

13

Application of three-dimensional molecular hydrophobicity potential to the analysis of spatial organization of membrane domains in proteins. III. Modeling of intramembrane moiety of Na+, K+-ATPase

Roman G. Efremov, Dmitry I. Gulyaev, Nikolai N. Modyanov

Journal:

The Protein Journal

Year:

1993

Language:

english

File:

PDF, 863 KB

english, 1993

14

Implicit two-phase solvation model as a tool to assess conformation and energetics of proteins in membrane-mimetic media

Roman Efremov, Pavel Volynsky, Dmitry Nolde, Gérard Vergoten, Alexander Arseniev

Journal:

Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta)

Year:

2001

Language:

english

File:

PDF, 236 KB

english, 2001

15

Assessment of conformation and energetics of the N-terminal part of elafin via computer simulations

Roman G. Efremov, Pavel E. Volynsky, Manuel A. M. Dauchez, Dmitry E. Nolde, Alexander S. Arseniev, Alain J. P. Alix

Journal:

Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta)

Year:

2001

Language:

english

File:

PDF, 205 KB

english, 2001

16

Peptides in membranes: assessment of environmental effects via simulations using an implicit solvation model

Roman G. Efremov, Dmitry E. Nolde, Gérard Vergoten, Alexander S. Arseniev

Journal:

Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta)

Year:

1999

Language:

english

File:

PDF, 286 KB

english, 1999

17

Association of transmembrane helices: what determines assembling of a dimer?

Roman G. Efremov, Yana A. Vereshaga, Pavel E. Volynsky, Dmitry E. Nolde, Alexander S. Arseniev

Journal:

Journal of Computer-Aided Molecular Design

Year:

2006

Language:

english

File:

PDF, 525 KB

english, 2006

18

Bond- versus site-centred ordering and possible ferroelectricity in manganites

Efremov, Dmitry V., van den Brink, Jeroen, Khomskii, Daniel I.

Journal:

Nature Materials

Year:

2004

Language:

english

File:

PDF, 457 KB

english, 2004

19

Synthesis and unusual electrochemical properties of nitropyrimidine-substituted diazadihomo(C60-Ih)[6,6]fullerene

Irina P. Romanova, Gulshat G. Yusupova, Olga A. Larionova, Adilya A. Nafikova, Dmitry G. Yakhvarov, Vladislav V. Zverev, Yury Ya. Efremov, Oleg G. Sinyashin

Journal:

Mendeleev Communications

Year:

2006

Language:

english

File:

PDF, 146 KB

english, 2006

20

Role of Lipid Charge in Organization of Water/Lipid Bilayer Interface: Insights via Computer Simulations

Polyansky, Anton A., Volynsky, Pavel E., Nolde, Dmitry E., Arseniev, Alexander S., Efremov, Roman G.

Journal:

Journal of Physical Chemistry B

Year:

2005

Language:

english

File:

PDF, 750 KB

english, 2005

21

Precipitation of human serum albumin from yeast culture liquid at pH values below 5

Sergey E. Cheperegin, Boris D. Efremov, Dmitry G. Kozlov

Journal:

Protein Expression and Purification

Year:

2010

Language:

english

File:

PDF, 581 KB

english, 2010

22

Monte Carlo simulations of voltage-driven translocation of a signal sequence

Roman G Efremov, Pavel E Volynsky, Dmitry E Nolde, Annemieke van Dalen, Ben de Kruijff, Alexander S Arseniev

Journal:

Year:

2002

Language:

english

File:

PDF, 138 KB

english, 2002

23

Factors important for fusogenic activity of peptides: molecular modeling study of analogs of fusion peptide of influenza virus hemagglutinin

Roman G. Efremov, Dmitry E. Nolde, Pavel E. Volynsky, Andrei A. Chernyavsky, Peter V. Dubovskii, Alexander S. Arseniev

Journal:

Year:

1999

Language:

english

File:

PDF, 298 KB

english, 1999

24

Dynamic clustering of lipids in hydrated two-component membranes: results of computer modeling and putative biological impact

Pyrkova, Darya V., Tarasova, Natalya K., Krylov, Nikolay A., Nolde, Dmitry E., Pentkovsky, Vladimir M., Efremov, Roman G.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2013

Language:

english

File:

PDF, 290 KB

english, 2013

25

Single-ion and exchange anisotropy effects and multiferroic behavior in high-symmetry tetramer single-molecule magnets

Klemm, Richard A., Efremov, Dmitri V.

Journal:

Physical Review B

Year:

2008

Language:

english

File:

PDF, 744 KB

english, 2008

26

Fusion Peptide Interaction with Lipid Bilayer: Modeling with Monte Carlo Simulation and Continuum Electrostatics Calculation

Kosinsky, Yuri A., Dubovskii, Peter V., Nolde, Dmitry E., Arseniev, Alexander S., Efremov, Roman G.

Journal:

Molecular Simulation

Year:

2000

Language:

english

File:

PDF, 533 KB

english, 2000

27

Dissecting structural basis of the unique substrate selectivity of human enteropeptidase catalytic subunit

Ostapchenko, Valeriy G., Gasparian, Marine E., Kosinsky, Yurij A., Efremov, Roman G., Dolgikh, Dmitry A., Kirpichnikov, Mikhail P.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2012

Language:

english

File:

PDF, 444 KB

english, 2012

28

Interaction of Cardiotoxins with Membranes: A Molecular Modeling Study

Efremov, Roman G., Volynsky, Pavel E., Nolde, Dmitry E., Dubovskii, Peter V., Arseniev, Alexander S.

Journal:

Biophysical Journal

Year:

2002

Language:

english

File:

PDF, 413 KB

english, 2002

29

Specific Membrane Binding of Neurotoxin II Can Facilitate Its Delivery to Acetylcholine Receptor

Lesovoy, Dmitry M., Bocharov, Eduard V., Lyukmanova, Ekaterina N., Kosinsky, Yurij A., Shulepko, Mikhail A., Dolgikh, Dmitry A., Kirpichnikov, Mikhail P., Efremov, Roman G., Arseniev, Alexander S.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 829 KB

english, 2009

30

A Solvent Model for Simulations of Peptides in Bilayers. II. Membrane-Spanning α-Helices

Efremov, Roman G., Nolde, Dmitry E., Vergoten, Gérard, Arseniev, Alexander S.

Journal:

Biophysical Journal

Year:

1999

Language:

english

File:

PDF, 332 KB

english, 1999

31

A Solvent Model for Simulations of Peptides in Bilayers. I. Membrane-Promoting α-Helix Formation

Efremov, Roman G., Nolde, Dmitry E., Vergoten, Gérard, Arseniev, Alexander S.

Journal:

Biophysical Journal

Year:

1999

Language:

english

File:

PDF, 244 KB

english, 1999

32

Architecture of the Sodium Pump Molecule : Vectorial Labeling and Computer Modeling

NIKOLAI N. MODYANOV, NATALIA M. VLADIMIROVA, DMITRY I. GULYAEV, ROMAN G. EFREMOV

Journal:

Annals of the New York Academy of Sciences

Year:

1992

Language:

english

File:

PDF, 754 KB

english, 1992

33

Evaluation of nutritional screening tools for patients scheduled for cardiac surgery

Lomivorotov, Vladimir V., Efremov, Sergey M., Boboshko, Vladimir A., Nikolaev, Dmitry A., Vedernikov, Pavel E., Lomivorotov, Vladimir N., Karaskov, Alexander M.

Journal:

Year:

2013

Language:

english

File:

PDF, 145 KB

english, 2013

34

Method To Assess Packing Quality of Transmembrane α-Helices in Proteins. 2. Validation by “Correct vs Misleading” Test

Chugunov, Anton O., Novoseletsky, Valery N., Nolde, Dmitry E., Arseniev, Alexander S., Efremov, Roman G.

Journal:

Journal of Chemical Information and Modeling

Year:

2007

Language:

english

File:

PDF, 137 KB

english, 2007

35

Lipid-II forms potential “landing terrain” for lantibiotics in simulated bacterial membrane

Chugunov, Anton, Pyrkova, Darya, Nolde, Dmitry, Polyansky, Anton, Pentkovsky, Vladimir, Efremov, Roman

Journal:

Scientific Reports

Year:

2013

Language:

english

File:

PDF, 4.12 MB

english, 2013

36

Hypothermic Versus Normothermic Cardiopulmonary Bypass in Patients With Valvular Heart Disease

Lomivorotov, Vladimir V., Shmirev, Vladimir A., Efremov, Sergey M., Ponomarev, Dmitry N., Moroz, Gleb B., Shahin, Denis G., Kornilov, Igor A., Shilova, Anna N., Lomivorotov, Vladimir N., Karaskov, Ale

Journal:

Journal of Cardiothoracic and Vascular Anesthesia

Year:

2014

Language:

english

File:

PDF, 206 KB

english, 2014

37

Does Glutamine Promote Benefits for Patients With Diabetes Mellitus Scheduled for Cardiac Surgery?

Lomivorotov, Vladimir V., Efremov, Sergey M., Shmirev, Vladimir A., Ponomarev, Dmitry N., Svyatchenko, Alexandr V., Deryagin, Mihail N., Lomivorotov, Vladimir N., Karaskov, Alexander M.

Journal:

Heart Lung & Circulation

Year:

2013

Language:

english

File:

PDF, 186 KB

english, 2013

38

Non-Landau Damping of Magnetic Excitations in Systems with Localized and Itinerant Electrons

Chubukov, Andrey V., Betouras, Joseph J., Efremov, Dmitry V.

Journal:

Physical Review Letters

Year:

2014

Language:

english

File:

PDF, 243 KB

english, 2014

39

Structural Aspects of Transmembrane Domain Interactions of Receptor Tyrosine Kinases

Bocharov, Eduard, Mineev, Konstantin, Lesovoy, Dmitry, Goncharuk, Marina, Goncharuk, Sergey, Bocharova, Olga, Volynsky, Pavel, Efremov, Roman, Arseniev, Alexander

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 62 KB

english, 2011

40

Mortality Prediction in Patients with Dialysis-dependent Acute Kidney Injury after Cardiac Surgery with Cardiopulmonary Bypass

Malov, Andrey A., Borisov, Alexander S., Lomivorotov, Vladimir V., Efremov, Sergey M., Ponomarev, Dmitry N., Mukhoedova, Tamara V., Karaskov, Alexander M.

Journal:

Heart Lung & Circulation

Year:

2014

Language:

english

File:

PDF, 572 KB

english, 2014

41

Structure-Functional Insight into Transmembrane Helix Dimerization by Protein Engineering, Molecular Modeling and Heteronuclear NMR Spectroscopy

Bocharov, Eduard, Volynsky, Pavel, Mineev, Konstantin, Lesovoy, Dmitry, Nadezhdin, Kirill, Bocharova, Olga, Goncharuk, Marina, Goncharuk, Sergey, Efremov, Roman, Arseniev, Alexander

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 37 KB

english, 2012

42

Three-Dimensional Structure/Hydrophobicity of Latarcins Specifies Their Mode of Membrane Activity †,‡

Dubovskii, Peter V., Volynsky, Pavel E., Polyansky, Anton A., Karpunin, Dmitry V., Chupin, Vladimir V., Efremov, Roman G., Arseniev, Alexander S.

Journal:

Year:

2008

Language:

english

File:

PDF, 340 KB

english, 2008

43

Method To Assess Packing Quality of Transmembrane α-Helices in Proteins. 1. Parametrization Using Structural Data

Chugunov, Anton O., Novoseletsky, Valery N., Nolde, Dmitry E., Arseniev, Alexander S., Efremov, Roman G.

Journal:

Journal of Chemical Information and Modeling

Year:

2007

Language:

english

File:

PDF, 679 KB

english, 2007

44

Helix Interactions in Membranes: Lessons from Unrestrained Monte Carlo Simulations

Vereshaga, Yana A., Volynsky, Pavel E., Nolde, Dmitry E., Arseniev, Alexander S., Efremov, Roman G.

Journal:

Journal of Chemical Theory and Computation

Year:

2005

Language:

english

File:

PDF, 798 KB

english, 2005

45

Layer

Ganesh, R., Baskaran, G., van den Brink, Jeroen, Efremov, Dmitry V.

Journal:

Physical Review Letters

Year:

2014

Language:

english

File:

PDF, 396 KB

english, 2014

46

The Membrane-proximal Fusion Domain of HIV-1 GP41 Reveals Sequence-specific and Fine-tuning Mechanism of Membrane Binding

Efremov, Roman G., Volynsky, Pavel E., Nolde, Dmitry E., Vergoten, Gérard, Arseniev, Alexander S.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2007

Language:

english

File:

PDF, 1.11 MB

english, 2007

47

Atomic Solvation Parameters for Proteins in a Membrane Environment. Application to Transmembrane α-Helices

Nolde, Dmitry E., Arseniev, Alexander S., Vergoten, Gérard, Efremov, Roman G.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1997

Language:

english

File:

PDF, 1.10 MB

english, 1997

48

Phosphoric Anhydride in Organic Synthesis. Migration of the Dihydroxyphosphoryl Group in Amides

Efremov, Dmitry A., Zavlin, Pavel M.

Journal:

Phosphorus Sulfur and Silicon and the Related Elements

Year:

1999

Language:

english

File:

PDF, 144 KB

english, 1999

49

Heisenberg dimer single molecule magnets in a strong magnetic field

Efremov, Dmitri V., Klemm, Richard A.

Journal:

Physical Review B

Year:

2002

Language:

english

File:

PDF, 190 KB

english, 2002

50

Nonanalytic behavior of two-dimensional itinerant ferromagnets

Efremov, Dmitry V., Betouras, Joseph J., Chubukov, Andrey

Journal:

Physical Review B

Year:

2008

Language:

english

File:

PDF, 106 KB

english, 2008